RnoEX0094702 @ rn6
Exon Skipping
Gene
ENSRNOG00000042932 | Ttc27
Description
tetratricopeptide repeat domain 27 [Source:RGD Symbol;Acc:1305264]
Coordinates
chr6:21796913-21818606:-
Coord C1 exon
chr6:21818511-21818606
Coord A exon
chr6:21815385-21815507
Coord C2 exon
chr6:21796913-21797140
Length
123 bp
Sequences
Splice sites
3' ss Seq
CGCTGCTCCTGTTTCCCCAGCGC
3' ss Score
8.64
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GCTCTTGCAGACCAATTTGAAGATAAAACCACATCTGTACTGGAGCGTCTGAAGATTTTCTACTGCTGTCAAGTGCCCCCTCACTGGGCTGTCGAG
Seq A exon
CGCCAGCTCGCAGGTTTGCTGTTTGAGTTGGGATGCACCAGCTCAGCCCTGCAGATATTTGAGAAGCTGGAGATGTGGGAGGACGTAGTCATCTGCCATGAAAGGGCTGGGCAGCACGGGAAG
Seq C2 exon
GCAGAAGAAATTCTTAGGCAAGAACTGGAGAAGAAGGAAACACCAAGTTTATATTGCTTGCTTGGAGATGTCCTGCAAGATCACTCCTGCTATGACAAGGCCTGGGAGCTGTCCCGACACCGCAGTGCCCGTGCCCAGCGGTCCAAAGCTCTCCTCCATCTTCGGAACAAGGAGTTTCGGGAGTGTGTGGAGTGCTTTGAACGCTCAGTGAAGATTAATCCCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042932_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.026
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0051523=TPR_1=WD(100=44.7),PF134141=TPR_11=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACATCTGTACTGGAGCGT
R:
CTCCCGAAACTCCTTGTTCCG
Band lengths:
252-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]