DreEX0081954 @ danRer10
Exon Skipping
Gene
ENSDARG00000007918 | ttc27
Description
tetratricopeptide repeat domain 27 [Source:ZFIN;Acc:ZDB-GENE-030102-1]
Coordinates
chr17:22846143-22897177:+
Coord C1 exon
chr17:22846143-22846238
Coord A exon
chr17:22890257-22890379
Coord C2 exon
chr17:22896950-22897177
Length
123 bp
Sequences
Splice sites
3' ss Seq
GGCTCTCTGTGTATATTTAGAGG
3' ss Score
5.67
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
ACTCTGGTGGATTTCTTCAGTGAGAAGGACTGTCCCGTCACGGAGAGGCTGAAGATGTTCTACAGCTGCCGGGCTCCTCCTCTCTGGGATCTACAG
Seq A exon
AGGCAGTTGGCGAGTCTGTTGACTGATTTGGGCCTGACTAGTTCTGCACTGCTGATCTACGAGAGACTGGAGCTCTGGGAGGATGCAGTTGTGTGTCTGGAGAGGATGGGACAGCATGGCAAG
Seq C2 exon
GCGGAGGAGATTTTGAGGCGTGAGTTGGAGAAAAAGGAGACGCCGTCGCTGTACTGTCTGCTGGGCGATGTACTGAAGGATCCGCAGTATTATGACCGAGCATGGGAGCTTTCCAAACACCGCAGCGCACGTGCCCAGCGCTCCAAAGCTCTGCATCACCTGCGCCACAGAGAGTTCCAGCAGTGTGTGGAGTGTTTCGAACGCTCTCTACAAATCAACTCCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007918_MULTIEX3-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.013
Domain overlap (PFAM):
C1:
PF132811=DUF4071=PU(11.5=46.9)
A:
PF132811=DUF4071=FE(30.8=100)
C2:
PF132811=DUF4071=PD(55.4=94.7),PF134141=TPR_11=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACGGAGAGGCTGAAGATGT
R:
AAACACTCCACACACTGCTGG
Band lengths:
256-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]