BtaEX0038131 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000033010 | TTC27
Description
tetratricopeptide repeat domain 27 [Source:HGNC Symbol;Acc:HGNC:25986]
Coordinates
chr11:15372838-15381634:+
Coord C1 exon
chr11:15372838-15372949
Coord A exon
chr11:15377123-15377223
Coord C2 exon
chr11:15381398-15381634
Length
101 bp
Sequences
Splice sites
3' ss Seq
TCCGTGTATTTATCTTCCAGTGG
3' ss Score
9.01
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GCGTTCCAGTATCTCTCTAAGGCATACAAGTGTGACACACAGTCCAGTTGTTGGGAGAAAAATATTACGTCATTTAAGGAAGTGGTTCAAAGAGCCTTAGGACTCGCACATG
Seq A exon
TGGCTATTAAGTGCAGTAAAAACAAATCCAGTCCCCAGGAGGCTATACAAGTGCTGTCTTCAGTTCGACTCAATTTACGGGGCTTATTATCTAAAGCAAAG
Seq C2 exon
CAACTTTTTACAGATGCGGCAAGTGGAGAAATTGCCAGGGAATTAGCTGATGAAATAGCAGCTATGGACACCTTAGTGACAGAGCTTCAAGACCTAAGCAACCAATTTCGAAATCAGTATTGACCATCCTGGGAACAGTTTCTGGAAGAGGTGTTTCACTTTCCAGAATTTCTTTTATATCTGTGTATCTCAAACTCAAGATACTGATTTTTTTAAATAAATTTTTCTTGTATGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000033010_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTTCCAGTATCTCTCTAAGGC
R:
CCAGAAACTGTTCCCAGGATGG
Band lengths:
257-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development