DreEX0081945 @ danRer10
Exon Skipping
Gene
ENSDARG00000007918 | ttc27
Description
tetratricopeptide repeat domain 27 [Source:ZFIN;Acc:ZDB-GENE-030102-1]
Coordinates
chr17:22919031-22927281:+
Coord C1 exon
chr17:22919031-22919142
Coord A exon
chr17:22925014-22925114
Coord C2 exon
chr17:22926710-22927281
Length
101 bp
Sequences
Splice sites
3' ss Seq
TGTTTGTGTGCGCCCCTCAGTGT
3' ss Score
7.06
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
GCGCTGCAGTTTCTGAGTAAAGCTCATCGATGTGAAACGCAGGCGGCTGGATGGGAGAAAGACACAGGCAGCTTCAAATCTGTGGTGAAAGGTGCCAGAGACATGGCTAATG
Seq A exon
TGTCCATCAGCTGCAGCAGGTCGAAACGCAGTCCTCAAGAGGCTCTGCAGCTGCTGTCTTCAGCTCGACTCAGTCTGAAGAGTCTGACCACCAAAGCCAGA
Seq C2 exon
CAACTGTACACTGACGTGGCCACAGGTGAGCTCCACGATGACCTCAGAGATGATGTCATCGAACTGGAGCAGCTCATCACAGAAATCCAGGATTTGAGCGCACAGCTGCGCAGCCAATGACAAGCCAGATCATTATCTGCTATTCCTCTCTTTGGTTACTTTAAATGTTGCACTTTTAACATCATGTATTAGACCAACAAAACCTCTGGAGATCCTGGAGAGTTCAGGACGTCTGTCACTTGTTTTTAAATCAACAGGGGAAATAAAACCTGGAAGAAGGACTTGATGTTTTTTTTTCCCCATTATGACCTGATCCAGGGTCAGTTGTCTATGCCTTAATCAGAGCTCCTGTAATCACAGTGTGTGGTTTTTAAGATCCCCGAGACTGGTATTGAAATTTCTTTGTACAAGAGTGCCTGTTAAATAAACAGTAAACATCTTTTTCTAACATATTTCATCCTTGCACTGGTTCTTTTTGTCGCATCTGATTAATCTGATTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007918-'23-36,'23-32,24-36
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.088 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGCCAGAGACATGGCTAA
R:
AGACGTCCTGAACTCTCCAGG
Band lengths:
257-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]