GgaEX1060965 @ galGal4
Exon Skipping
Gene
ENSGALG00000010538 | TTC27
Description
tetratricopeptide repeat protein 27 [Source:RefSeq peptide;Acc:NP_001012585]
Coordinates
chr3:30719387-30723605:-
Coord C1 exon
chr3:30723494-30723605
Coord A exon
chr3:30722727-30722827
Coord C2 exon
chr3:30719387-30719637
Length
101 bp
Sequences
Splice sites
3' ss Seq
CTTCTGTGTTTGGATTCCAGTGG
3' ss Score
6.81
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
TCACTGCAGTGTCTTACTAAGGCACATAAATGTGAAATTCAGTCAAATGATTGGGAGAAAGATGTTTCTTCTTTTAAGGAAGTAGCGAAAGGAGCCATAGAGATTGCACATG
Seq A exon
TGGCTATAAAATGCAGTAAGAAGAAATCCAATAATCAGGAGGCTTTGCAGATACTTTCTTCAGCTCGGCTTAACTTACGTGGCTTGTCATCCAAAGCAAAG
Seq C2 exon
CAACGCTTTGTAGATGTAGGAAGCCATGAGATTTGCAATGAGGTCGCTGATGAGGTGACAACTATGGACAACTTGATTGCTGAACTCCAGGAACTGAGCAACCAGCTGAGGGACCAGGGCTGAAACACAGACCAGATTTCGTGACTGGAAAACAAGAATGACGTATTTGTTTTGTTACAACCTTTACTGATGAAATGGTAACAATTGTAAAGCAACTTACATCCTCAATAAATGTTTTTCTGAACAAATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010538-'47-56,'47-52,48-56
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.025
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGCAGTGTCTTACTAAGGCA
R:
GTCTGTGTTTCAGCCCTGGTC
Band lengths:
243-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]