HsaEX6012851 @ hg38
Exon Skipping
Gene
ENSG00000018699 | TTC27
Description
tetratricopeptide repeat domain 27 [Source:HGNC Symbol;Acc:HGNC:25986]
Coordinates
chr2:32812504-32821051:+
Coord C1 exon
chr2:32812504-32812615
Coord A exon
chr2:32817457-32817557
Coord C2 exon
chr2:32820816-32821051
Length
101 bp
Sequences
Splice sites
3' ss Seq
TCTCCATACTTATCTTCCAGTGG
3' ss Score
8.92
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GCATTCCAGTGCCTCTCAAAGGCATACAAGTGTGACACCCAGTCCAATTGTTGGGAGAAAGATATTACATCATTTAAGGAAGTTGTTCAAAGAGCCTTAGGACTTGCACATG
Seq A exon
TGGCCATAAAATGCAGTAAAAACAAATCCAGTTCCCAAGAAGCTGTACAAATGCTTTCTTCTGTTCGACTCAATTTACGGGGCTTGTTATCTAAAGCAAAG
Seq C2 exon
CAACTTTTTACAGATGTGGCAACTGGAGAAATGTCCAGGGAATTAGCTGATGACATAACAGCTATGGACACCTTAGTGACAGAGCTCCAAGACCTAAGCAACCAGTTTCGAAATCAGTATTGATTCTGCTGGAAGCAGATTCTGGAAAAGGTGCTTTCACCTGCTGGTAAAAGATACATCTGTATATCTGAAATGCAAGATATTGATTTTTAAAATAAATTTGTTTTATGACTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000018699_MULTIEX1-8/8=7-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF061226=TraH=FE(25.5=100)
A:
PF061226=TraH=FE(22.8=100)
C2:
PF061226=TraH=PD(21.4=75.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATACAAGTGTGACACCCA
R:
AGCACCTTTTCCAGAATCTGCT
Band lengths:
247-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains