MmuEX6079378 @ mm10
Exon Skipping
Gene
ENSMUSG00000024078 | Ttc27
Description
tetratricopeptide repeat domain 27 [Source:MGI Symbol;Acc:MGI:1921446]
Coordinates
chr17:74858009-74863570:+
Coord C1 exon
chr17:74858009-74858120
Coord A exon
chr17:74862046-74862146
Coord C2 exon
chr17:74863334-74863570
Length
101 bp
Sequences
Splice sites
3' ss Seq
TCCCTGCGTTCATCTTGCAGTGG
3' ss Score
9.99
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GCATTCCAGTGTCTCTCGAAGGCGTACAAGTGTGACACACAGTCCAGTTGTTGGGAGAAAGATGCTACAGCATTTAAGGAAGTTGTTCAAAGAGCCATAGGACTCGCTCATG
Seq A exon
TGGCTATGAAATGCGCTGAGAGCAAGTCCATTCCCCAGGAAGCTGTACAAACACTTTCTTCAGTTCGACTCAATTTACGTGGCTTGTTATCCAAAGCAAAG
Seq C2 exon
CAGAATTTTACAGATGTGGTAAGTGGAGAAGTCTCTGGAGAGCTCGCCAGTGAAATAGCAGCTGTGAATGCTCTGGAGGCAGAGCTGCAAGACCTCAGCAACCAGCTTCGAAACCGGTACTGACTGAAAAGCAGCTTGTGGCGCAGTCTCTTCTGCTTTCTCCAATTCCTCCAGTACCTGTATTTCTGAAACACAAGATACCCGTTTTTAAAATAAATTTGTTTGCTGGCAAACGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024078-'37-41,'37-40,39-41
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSMUST00000024882fB18828
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTCTCTCGAAGGCGTACA
R:
GCCACAAGCTGCTTTTCAGTC
Band lengths:
247-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types