RnoEX6027686 @ rn6
Exon Skipping
Gene
ENSRNOG00000042932 | Ttc27
Description
tetratricopeptide repeat domain 27 [Source:RGD Symbol;Acc:1305264]
Coordinates
chr6:21735834-21741298:-
Coord C1 exon
chr6:21741187-21741298
Coord A exon
chr6:21737197-21737297
Coord C2 exon
chr6:21735834-21736065
Length
101 bp
Sequences
Splice sites
3' ss Seq
TCCCTATGTTTACCTTGCAGTGG
3' ss Score
8.83
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GCATTCCAGTATCTCTCAAAGGCGTACAAGTGCGACACACAGTCCGGTTGTTGGGAGAAAGATGCTACAGCATTTAAGGAAGTTGTTCAAAGAGCCATAGGACTGGCGCATG
Seq A exon
TGGCTATAAAATGCAGTGAGAGCAAGTCCAGTCCCCAGGAAGCTATACAAGCACTTTCTTCAGTCCGGCTCAATTTACGTGGCTTGTTATCCAAAGCAAAG
Seq C2 exon
CAGAATTTTACGGACGTAGTGAGTGGAGACGTCTCGGGAGAGCTAGCCAGTGAGATAGCAGCTATGAGAGCTCTGGAGGCCGAGCTGCAGGACCTCAGCAACCAGCTTCGAAACCGGTACTGACTGAGAATCAGCTTGTGGCCGTCACTTATGTCGTCTCCAATTCCTCCAGTACCTGTAGATGAAACACCAGATGCCAATTTTTAAAATAAATTTGTTTGCCGGCAAACGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042932-'44-37,'44-36,47-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAAAGGCGTACAAGTGCGA
R:
GACGACATAAGTGACGGCCAC
Band lengths:
256-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]