BtaEX0038236 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012827 | TTLL11
Description
TTLL11 protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:A7E2Z5]
Coordinates
chr11:92686070-92741514:-
Coord C1 exon
chr11:92741263-92741514
Coord A exon
chr11:92734045-92734151
Coord C2 exon
chr11:92686070-92696211
Length
107 bp
Sequences
Splice sites
3' ss Seq
TCCTCTCCCATCTTGGGCAGGAG
3' ss Score
7.19
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
GTCTCAGCTGCTGGGGAAGTCGTTAGCCTCAAAAGAAAATCCTCCTCACAGCGATCTGGCCAGCGCCTCACAGGGCAACGCCAACCCCGACGCCCACCTGCCCTCCATCTGCCTCAAGCAGGTGTTCCCCAAGTATGCAAAGCAGTTCAACTACCTGCGCCTGGTGGACAGGATGGCAAACCTGTTTATCCGCTTCCTGGGAATCAAGGGGACGATGAAGTTGGGACCAACAGGCTTCCGTACCTTCATCAG
Seq A exon
GAGCTGCAAGCTCAGCAGCAGCAGCCTGTCCATGGCCGCGGTGGACATCCTCTACATCGACATCACGAGGAGGTGGAACTCCATGACCATGGACCAGCGGGATTCAG
Seq C2 exon
GGATGTGCCTGCAGGCCTTCGTGGAGGCCTTCTTTTACCTGGCCCAGAGGAAGTTCAAGATGCTGCCGCTCCACGAGCAGGTGGCCTCGCTGATCGACCTGTGTGAATACCACCTGTCCTTGCTGGACGAGAAGCGCCTAGTGTGTGGCCGCAGCGGCACATCGTCAGGGAGCCGGCTCCAGCCCAGCGGAACCCCGCAGGAGGCCGCGCCTCCAGCCCCACCGGCCGAGGGCCGGCCCCAGCCCTGCACAGATGGCGCCCACAAGGTCTCCCACTCCAGACACACCCTGTCCTGAGGGCCGCTCTGTCTTCCCGGAAGAAGGCTGAGCCTGAAAGACGCCACCCCCGGGCTTCCTGCTGGTGGAGAGATGGCAGGATGCTAAGTCCCAGCCCGAGATCCCGCTCCTCGTCTCCGCGTTCTGCTGAGCTGCGCTTGGCGAGCCCGCCTGATTCTCGCCCGCTCTCCTTCCCAGCACCTCTTGGTGGCCCACCTGCTCGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012827_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.148 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTCCTCACAGCGATCTGG
R:
GCCAGGTAAAAGAAGGCCTCC
Band lengths:
257-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development