DreEX0082100 @ danRer10
Exon Skipping
Gene
ENSDARG00000060374 | ttll11
Description
tubulin tyrosine ligase-like family, member 11 [Source:ZFIN;Acc:ZDB-GENE-061013-747]
Coordinates
chr5:33057716-33068807:+
Coord C1 exon
chr5:33057716-33057952
Coord A exon
chr5:33059698-33059804
Coord C2 exon
chr5:33068448-33068807
Length
107 bp
Sequences
Splice sites
3' ss Seq
TAATTCAACATCTCCTTTAGGAA
3' ss Score
6.32
5' ss Seq
CAGGCAAGC
5' ss Score
2.13
Exon sequences
Seq C1 exon
GTCAAATGCCGGGGGTGTTTCCCCAGAAGACGCTATTGTTGTGGAAACAGCAAGTGATGAGAAAGAAGGCTTGGCGGATTCACTTCCATCTTTGTGTTTAAAGCAAGTCTTCCCCAAATACACCAAGCAGTTTAATTACTTGAGGGTCGTGGATCGCATCGCTACCATATTCCTGCGCTTCCTTGGTGTCAAAGGGACCATGAAACTCGGTCCGACCGGGTTCCGCACCTTTATCAG
Seq A exon
GAACTGCAAACTGAGCAACAGCAGCTTCTCAATGGCGTCAGTGGACATCCTGTACATCGACATCACGCGCCGCTGGGCTGGAATAAACCCCGACTCCAGAGAGGCAG
Seq C2 exon
GAATGTGTCTTCAGGCATTTATTGAGGCCTTCTTCTACCTGGCAGCACGTAGGTTCAAGGCTTCACCCTTGCGGGAGCAGGTGCTCTTGCTGCTGGAGGTGTGTGAAGGGGCCCTTGAGGGCCAAAGTCCCACTGACAAGCCACGGCCACAGAAATCACACACAAACCCCGGCCCTATGCAACCATCAGCGCCAAACACGTTCAGTTCTCCTGCACTAATGCGCCGCCGGCACCAGCCGCTGCAGATCTCTGCTAAAGCCAACACAGACAACTGACAATCACACACACAGATACAGCCTTCTGAAGAACTCTCAGAAGGCAGCTTGATGTGCTTTGGGAAAAAAAAAAATAAAAAAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060374_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.046 A=0.000 C2=0.521
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGAAAGAAGGCTTGGCGG
R:
GGGTGAAGCCTTGAACCTACG
Band lengths:
249-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]