HsaEX0068061 @ hg19
Exon Skipping
Gene
ENSG00000175764 | TTLL11
Description
tubulin tyrosine ligase-like family, member 11 [Source:HGNC Symbol;Acc:18113]
Coordinates
chr9:124584207-124633027:-
Coord C1 exon
chr9:124632776-124633027
Coord A exon
chr9:124622616-124622722
Coord C2 exon
chr9:124584207-124585158
Length
107 bp
Sequences
Splice sites
3' ss Seq
TCACTTCCCATTGTTGGCAGGAG
3' ss Score
5.72
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
GTCTCAGCAGCTTGAAAAACCATTCGCTGGAAAGGAAGATGCTTTGGACGGCGAGCTGACCAGTGCTCCAGACTGCAACGCCAACCCCGAAGCCCACCTGCCTTCCATTTGCCTCAAGCAGGTGTTCCCCAAGTACGCAAAACAGTTCAACTACCTGCGCCTGGTGGACAGGATGGCAAATTTGTTTATCCGGTTCCTGGGCATCAAGGGGACAATGAAGTTGGGGCCAACAGGCTTTCGTACCTTCATAAG
Seq A exon
GAGCTGCAAACTCAGCAGCAGCAGCCTGTCCATGGCTGCCGTGGACATCCTCTACATTGACATCACACGGAGGTGGAACTCCATGACCCTGGACCAGCGGGACTCAG
Seq C2 exon
GGATGTGTCTGCAGGCCTTCGTAGAAGCTTTCTTTTTCCTGGCTCAGAGGAAGTTCAAGATGCTGCCACTTCATGAGCAGGTGGCCTCACTGATTGACCTTTGCGAGTACCACCTGTCCCTGCTGGATGAAAAACGCCTGGTGTGTGGCCGGGGCGTCCCGTCGGGGGGCCGGCCCCCACACCGTGGCCCTCCCCAGGAGCCCTCCCCCTCGGCCCAGCCAGCAGGGGACAACCCCCCACCCCGCACCAGCTGTGCCAATAAGCTCTCCCATCCCAGACATACCCTGTCCTGAGGGCCACTCTGTCCTCCTGGAAAACGGAAGACGAGAGCAGCTTTCAGGGCTGGAGCGCCCCAGGCATTCTGCCTGCAGAGGAATGGCAGGCAGGCTGCCGAGGGGCCCAGCTGAGGTCCCCACGAACTGTCTCTGTGTGCGGCTGAGCTGTGCTTCACCAGGCTGGCTGGTTCTCACCTGCCTTCCTCCTCACACCTCCTGGTGATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175764_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.153 A=0.000 C2=0.464
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTTCCCCAAGTACGCAAA
R:
CAGGTGGTACTCGCAAAGGTC
Band lengths:
248-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)