RnoEX0002985 @ rn6
Exon Skipping
Gene
ENSRNOG00000019339 | AABR07051518.1
Description
tubulin tyrosine ligase like11 [Source:NCBI gene;Acc:689746]
Coordinates
chr3:15084634-15131474:-
Coord C1 exon
chr3:15131232-15131474
Coord A exon
chr3:15119229-15119335
Coord C2 exon
chr3:15084634-15085491
Length
107 bp
Sequences
Splice sites
3' ss Seq
CTTCTTCCCTGTCACGGCAGGAA
3' ss Score
8.23
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
GTCTCAGCAGATGGATAAGCCTTTCGCTGCAAAGGAAGATCTGAACTGTGACCTGGCCGGAGACTTCGAGCCCAACCCTGAAGCCCATTTGCCCTCCATTTGCCTCAAGCAGGTGTTCCCCAAGTATGCCAAGCAGTTCAATTACCTGCGCCTGGTAGACAGGATGGCCAATTTGTTCATCCGATTCCTGGGAATCAAGGGGACAATGAAGTTGGGACCAACTGGCTTTCGGACCTTCATAAG
Seq A exon
GAACTGCAAGCTGAGCAGCAGCAGCCTGTCCATGGCGGCGGTGGACATCCTCTACATCGACATCACCAGGAGGTGGAACTCGGTGGCTCTGGACCAGCGGGACACAG
Seq C2 exon
GGATGTGTCTGCAGGCATTCGTTGAAGCTTTCTTCTTCTTGGCCCAGAGGAAGTTCAAGCTGCAACCTCTCCATGAGCAGGTGGCGTCCTTGATTGACCTGTGTGAATACCACCTGTCCCTGCTGGATGAAAAACGCTTGTTGTGCCATCGGGGCCGGTCCCACCAAAGAAACACCCCTCAGATGAACCGCACAACCCATTCAGCTGCGGGCAGCTCTGCACCCCGAGTGATCGGGGCTAGCAAACTCTCTCACTCCTGACACGCTCTGTCCTGACGTCCTGGAAGAAGGTGTGCCCTCGGGGGCTGAGGACCCCAGGCTCCCCCCACCTGTCGGGAGCCACTAGGGTTCCAGCTGCAATCACCCGTGCGTCCTCTCTGTGTCCTGTAGGGCTCTTGCCTCACACGGCCAATCCTTGCCCACTCCCCACCCAGCACCTCGTGGTGACCTCACCCTGTTTGGGAATCATCAGTGGACATATGACATCCAAGATGTGACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019339-'17-21,'17-20,18-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.000 C2=0.233
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCCATTTGCCCTCCATTT
R:
CTGCTCATGGAGAGGTTGCAG
Band lengths:
243-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]