MmuEX0049653 @ mm9
Exon Skipping
Gene
ENSMUSG00000026885 | Ttll11
Description
tubulin tyrosine ligase-like family, member 11 [Source:MGI Symbol;Acc:MGI:1921660]
Coordinates
chr2:35606761-35651122:-
Coord C1 exon
chr2:35650877-35651122
Coord A exon
chr2:35639609-35639715
Coord C2 exon
chr2:35606761-35608012
Length
107 bp
Sequences
Splice sites
3' ss Seq
CTTCTTCCCTGTCGCGGCAGGAA
3' ss Score
8.91
5' ss Seq
CAGGTATCC
5' ss Score
7.91
Exon sequences
Seq C1 exon
GTCTCAGCAGATGGAAAAGTCTTTCACTTCAAAGGAAGATCTGAACTGTGACCCGACTGGTGGTGACTCCGAGCCCAACCCTGAAGCCCATCTGCCCTCCATTTGCCTCAAGCAGGTGTTCCCCAAGTATGCCAAGCAGTTCAACTACTTGCGCCTCGTGGACAGGATGGCCAATTTGTTCATCCGATTTCTGGGAATCAAGGGGACGATGAAGTTGGGACCAACTGGCTTTCGGACCTTCATAAG
Seq A exon
GAACTGCAAACTCAGCAGCAGCAGCCTGTCCATGGCAGCTGTGGACATCCTCTACATAGACATCACAAGGAGGTGGAACTCGGTGACCGTGGACCAGCGGGACTCAG
Seq C2 exon
GGATGTGTCTGCAGGCATTTGTCGAAGCTTTCTTCTTCCTGGCCCAGAGGAAGTTCAAGCTGCAACCTCTCCATGAGCAGGTGGCGTCCTTGATTGACCTGTGTGAATACCACCTGTCCGTGCTGGATGAAAAACGCTTGCTGTGCCATCGGGGCCGGCCCCTCCAAAGAAATCCGCCCCAGATGAACCGCCCAGAGCATTCAGCCACAGGCAGCTCTGCACCCCGAGTAATCGGGGCTAGCAAGCTCTCTCAATCCTGACATGCTCTGTCCTGAAGGCCACTCTGTCCTGGAAGAAGGCGTGCCTGTGGGGGCTGAGTACCCTGGGCTCCCCCCACCCCCATCTGTTGGGAGCCACTAGGGTTCCAGCTGCAATCACCTGTGCGTCCTCTCTGTGTTCCGTAGGGCATTTTGCCTCACACGGCCAATCCTTGCCTGTCCCCTTCCCAGCACTTCATGGTGACCCACCCTGTTTGGGAATCATCAGTGGATATATGACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026885_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.266 A=0.000 C2=0.267
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAAGTATGCCAAGCAGTT
R:
CAGCACGGACAGGTGGTATTC
Band lengths:
251-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: