GgaEX1061143 @ galGal4
Exon Skipping
Gene
ENSGALG00000001389 | TTLL11
Description
tubulin tyrosine ligase-like family member 11 [Source:HGNC Symbol;Acc:HGNC:18113]
Coordinates
chr17:8625210-8632687:-
Coord C1 exon
chr17:8632423-8632687
Coord A exon
chr17:8630116-8630222
Coord C2 exon
chr17:8625210-8626231
Length
107 bp
Sequences
Splice sites
3' ss Seq
CTGTTGTTCATTTTTAACAGAAA
3' ss Score
8.99
5' ss Seq
CAGGTAACG
5' ss Score
10.52
Exon sequences
Seq C1 exon
GCTACAGATCTCAGACTTCAGAGCATGTGTCAGAAACAAAAGAGGATCTGCTGGATGCAGGGCCAGCGGGTGGACTGGAATATGATACCAGCAAGACCCCAGAGGCTGGCCTACCCTCCCTTTGTCTCAAGCAAGTGTTTCCAAAGTATGCTAAGCAGTTTAATTATCTGCGACTTGTGGACAGAGTGGCTGCATTGTTCATCCGATTTCTTGGTGTCAAAGGGACAACAAAATTGGGGCCGACGGGTTTCCGGACGTTTATAAG
Seq A exon
AAACTGCAAGCTCAGTAACAGCAATTTTTCAATGGCTGCTGTAGATATCTTATACATTGATATCACAAGAAGGTGGAACAGTATGGGAATTGATCACAAAGAATCAG
Seq C2 exon
GAATGTGTTTGCAAGCCTTTGTTGAAGCTTTCTTCTGCTTGGCTCAGAAAAAGTACAAGTCACTTCCTCTTCATGAGCAGGTGGCATCACTGATTGACTTCTGTGAGTATCACCTGGCTGCCCTGGATGAGAAGCGCCTGCTTTGTGGCCGAGGCGTTGTGGAGCGCCGAAGTGCAGTGGTTGCCTGTCCGACAGATGGACTTGAGGGTACACCAGCTCTGCATGCACCCCTCCTAAACTGCACGGCTGCAGCTGGTAAACTTGCAGGTTGTAGAAGTCATCGCTATCCTGGTGCTGTTTCACCAGGAGCAGGAAGAGACTGAGAGAACTGAGAATTAATCTCCAGGTATGTATAAGCTGCAGGATGTGGAAAAGACTCTTGAATTCCTTTTTTTTTCTATTCATGCTCTTCAGAAAGTCAGCTGCAAGGTCCTATTCTCAAATACTGATCCTTCTTCACAATGGCTACTTTTTGTTTAACCTCTCCACTGAGCCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001389-'13-23,'13-21,17-23
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.084 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000002114fB174
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTACCCTCCCTTTGTCTCA
R:
CAATCAGTGATGCCACCTGCT
Band lengths:
253-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]