BtaEX0039142 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002084 | UNC5C
Description
unc-5 homolog C (C. elegans) [Source:HGNC Symbol;Acc:HGNC:12569]
Coordinates
chr6:30717111-30735381:+
Coord C1 exon
chr6:30717111-30717275
Coord A exon
chr6:30733148-30733204
Coord C2 exon
chr6:30735190-30735381
Length
57 bp
Sequences
Splice sites
3' ss Seq
TTTTTTGTTTCTTTTTCAAGGTT
3' ss Score
10.96
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
TGGATGGCAGGTGGACCTCGTGGAGCAAGTGGTCTACCTGCGGGACCGAGTGCACTCACTGGCGCAGGAGGGAGTGCACGGCACCAGCCCCCAAGAATGGAGGCAAGGACTGCGATGGTCTTGTCCTGCAGTCCAAGAACTGCACGGATGGGCTGTGCATGCAGA
Seq A exon
GTTTCATTTATCCTATTTCAACTGAGCAGAGAACCCAGAATGAATATGGATTTTCTT
Seq C2 exon
CTGCTCCTGATTCAGATGATGTTGCTCTGTATGTCGGCATTGTGATAGCTGTGATAGTCTGCCTGGCCATTTCTGTAGTTGTGGCCCTCTTTGTGTATAGGAAGAATCATCGTGACTTTGAGTCTGATATTATTGACTCTTCTGCACTCAATGGAGGCTTTCAGCCTGTGAACATCAAGGCAGCAAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002084_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.200 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000039753fB7594
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGACTGCGATGGTCTTGT
R:
ATGGCCAGGCAGACTATCACA
Band lengths:
132-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development