MmuEX0050636 @ mm9
Exon Skipping
Gene
ENSMUSG00000059921 | Unc5c
Description
unc-5 homolog C (C. elegans) [Source:MGI Symbol;Acc:MGI:1095412]
Coordinates
chr3:141433982-141452026:+
Coord C1 exon
chr3:141433982-141434146
Coord A exon
chr3:141449821-141449877
Coord C2 exon
chr3:141451835-141452026
Length
57 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTTTTCTTTTCAAGGAT
3' ss Score
10.9
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
TGGATGGTAGGTGGACTTCATGGAGCAAATGGTCAACCTGTGGGACTGAATGCACCCACTGGCGCAGGAGGGAGTGTACAGCACCAGCCCCCAAGAACGGGGGTAAGGACTGTGATGGCCTGGTCCTCCAATCCAAGAACTGCACTGATGGGCTGTGCATGCAGG
Seq A exon
GATTCATTTACCCCATTTCAACTGAGCACAGACCCCAGAATGAATATGGATTTTCTT
Seq C2 exon
CTGCTCCTGACTCAGATGATGTGGCTCTCTACGTGGGGATTGTGATCGCTGTAACAGTCTGTCTGGCGATCACTGTTGTGGTGGCCCTGTTTGTGTATCGGAAGAACCACCGTGACTTTGAGTCTGACATCATTGACTCCTCAGCACTCAATGGCGGCTTTCAGCCTGTGAACATCAAGGCTGCCAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059921_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.200 C2=0.000
Domain overlap (PFAM):
C1:
PF150281=PTCRA=FE(50.0=100)
A:
NO
C2:
PF150281=PTCRA=PD(24.5=41.5)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGGACTGTGATGGCCTGGT
R:
CACAACAGTGATCGCCAGACA
Band lengths:
142-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: