HsaEX0069385 @ hg38
Exon Skipping
Gene
ENSG00000182168 | UNC5C
Description
unc-5 netrin receptor C [Source:HGNC Symbol;Acc:HGNC:12569]
Coordinates
chr4:95219985-95242593:-
Coord C1 exon
chr4:95242429-95242593
Coord A exon
chr4:95222210-95222266
Coord C2 exon
chr4:95219985-95220176
Length
57 bp
Sequences
Splice sites
3' ss Seq
CATTTTTTTTTCTTTTCAAGGTT
3' ss Score
11.2
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
TGGATGGCAGGTGGACGCCATGGAGCAAGTGGTCTACTTGTGGAACTGAGTGCACCCACTGGCGCAGGAGGGAGTGCACGGCGCCAGCCCCCAAGAATGGAGGCAAGGACTGCGACGGCCTCGTCTTGCAATCCAAGAACTGCACTGATGGGCTTTGCATGCAGA
Seq A exon
GTTTCATTTATCCCATTTCAACTGAACAGAGAACCCAGAATGAATATGGATTTTCTT
Seq C2 exon
CTGCTCCTGATTCAGATGATGTTGCTCTCTATGTTGGGATTGTGATAGCAGTGATCGTTTGCCTGGCGATCTCTGTAGTTGTGGCCTTGTTTGTGTATCGGAAGAATCATCGTGACTTTGAGTCAGATATTATTGACTCTTCGGCACTCAATGGGGGCTTTCAGCCTGTGAACATCAAGGCAGCAAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182168_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.200 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTCGTCTTGCAATCCAA
R:
GCCACAACTACAGAGATCGCC
Band lengths:
134-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development