RnoEX0096630 @ rn6
Exon Skipping
Gene
ENSRNOG00000029071 | Unc5c
Description
unc-5 netrin receptor C [Source:RGD Symbol;Acc:735109]
Coordinates
chr2:247333335-247351691:+
Coord C1 exon
chr2:247333335-247333499
Coord A exon
chr2:247349526-247349582
Coord C2 exon
chr2:247351500-247351691
Length
57 bp
Sequences
Splice sites
3' ss Seq
ATTTATTTTTTCTTTTGAAGGAT
3' ss Score
9.77
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
TGGATGGCAGGTGGACTTCGTGGAGCAAATGGTCAACTTGTGGGACTGAGTGCACCCACTGGCGGAGGAGGGAGTGTACAGCACCAGCCCCCAAGAACGGGGGTAAGGACTGTGATGGCCTGGTCCTCCAATCCAAGAACTGCACCGATGGGCTGTGCATGCAGG
Seq A exon
GATTCATTTACCCCATTTCAACTGAGCACAGAACCCAGAGTGAATATGGATTTTCTT
Seq C2 exon
CTGCTCCTGACTCAGATGACGTTGCTCTCTACGTTGGGATTGTGATCGCTGTAACCGTTTGTCTGGCAATCACTGTTGTGGTGGCCCTGTTCGTGTATCGCAAGAACCACCGTGACTTTGAGTCTGATATCATTGACTCCTCAGCACTCAATGGCGGCTTTCAGCCTGTGAACATCAAGGCTGCCAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029071_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.200 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGGGGGTAAGGACTGTGAT
R:
CCAGACAAACGGTTACAGCGA
Band lengths:
136-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]