GgaEX0018388 @ galGal4
Exon Skipping
Gene
ENSGALG00000012219 | UNC5C
Description
netrin receptor UNC5C precursor [Source:RefSeq peptide;Acc:NP_989782]
Coordinates
chr4:58230514-58235136:-
Coord C1 exon
chr4:58235036-58235136
Coord A exon
chr4:58232137-58232193
Coord C2 exon
chr4:58230514-58230705
Length
57 bp
Sequences
Splice sites
3' ss Seq
TTAATTTCTTTCTTTTTAAGGTT
3' ss Score
12.32
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
TGCTTAATTTGCAAGCGCAAATGGAGCTGGCATTTGATGTGCTGTTCAGTACACTGCTGGCATGGCCCAGCTTGGCTGGGATGCTTAATAACCAGCCTGAG
Seq A exon
GTTTCATTTATCCTATTTCAACTGAACAGAGAACCCAGAATGAATATGGATTTTCTT
Seq C2 exon
CTGCACCTGACTCGGATGATGTTGCTCTCTACGTGGGGATTGTCATTGCTGTGATCGTTTGCCTGGCTATTTCTGTGGTTGTGGCCCTGTTTGTCTATCGCAAGAACCACCGTGACTTTGAGTCAGATATTATCGACTCATCGGCGCTAAATGGGGGATTTCAGCCTGTTAACATCAAGGCTGCAAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012219-'12-13,'12-12,13-13
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.200 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF150281=PTCRA=PD(25.9=44.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGTACACTGCTGGCATGG
R:
CAGGGCCACAACCACAGAAAT
Band lengths:
146-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]