GgaEX0018388 @ galGal3
Exon Skipping
Gene
ENSGALG00000012219 | UNC5C
Description
NA
Coordinates
chr4:60197235-60211749:-
Coord C1 exon
chr4:60211585-60211749
Coord A exon
chr4:60198858-60198914
Coord C2 exon
chr4:60197235-60197426
Length
57 bp
Sequences
Splice sites
3' ss Seq
TTAATTTCTTTCTTTTTAAGGTT
3' ss Score
12.32
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
TGGATGGCAAATGGACGTCCTGGAGCAAGTGGTCCACTTGTGGCACAGAGTGTACCCACTGGCGCCGGAGGGAGTGCACAGCTCCGGCCCCGAAGAATGGAGGCAAGGACTGCGAGGGACTGGTGCTGCAGTCTAAGAACTGCACTGATGGGCTCTGCATGCAGG
Seq A exon
GTTTCATTTATCCTATTTCAACTGAACAGAGAACCCAGAATGAATATGGATTTTCTT
Seq C2 exon
CTGCACCTGACTCGGATGATGTTGCTCTCTACGTGGGGATTGTCATTGCTGTGATCGTTTGCCTGGCTATTTCTGTGGTTGTGGCCCTGTTTGTCTATCGCAAGAACCACCGTGACTTTGAGTCAGATATTATCGACTCATCGGCGCTAAATGGGGGATTTCAGCCTGTTAACATCAAGGCTGCAAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012219_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.200 C2=0.000
Domain overlap (PFAM):
C1:
PF150281=PTCRA=FE(49.1=100)
A:
PF150281=PTCRA=PD(14.4=70.0)
C2:
PF150281=PTCRA=PD(25.9=44.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTGCACTGATGGGCTCTG
R:
TTGCGATAGACAAACAGGGCC
Band lengths:
132-189
Functional annotations
There are 0 annotated functions for this event