DreEX0083399 @ danRer10
Exon Skipping
Gene
ENSDARG00000087341 | unc5c
Description
unc-5 homolog C (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-030131-9196]
Coordinates
chr10:1051926-1069131:+
Coord C1 exon
chr10:1051926-1052090
Coord A exon
chr10:1062734-1062793
Coord C2 exon
chr10:1068940-1069131
Length
60 bp
Sequences
Splice sites
3' ss Seq
TCCCTCCCTCTCTCCCAAAGGTT
3' ss Score
10.84
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
TGGACGGTCTGTGGACGGAGTGGAGCAAATGGTCGACGTGTGGGACGGAGTGCACTCACTGGAGACGCAGGGAATGCAGTGCTCCAGCCCCCAAAAACGGAGGAAAAGACTGTGAGGGAACCGTGCTGCAGTCAAAGAACTGCACTGACGGACTCTGCATGCAGA
Seq A exon
GTTCCTTATATCAGAAGTCCTCCGAGCACACAGACAAGAGCAATGCTCTGCCACATCCAT
Seq C2 exon
CGGCCCCTAGCACAGATGACGTGGCGCTGTACGTGGGCATCGTGATCGCCGTCATCATGTGTCTGGTGATCTCGGTGATCGTGGCGCTCTTCGTCTACAGGAAAAACCACCGAGACTTCGACTCGGACATCATGGACTCATCTGCGCTCAACGGAGGATTCCAGCCTGTCAACATCAAGACGGCACGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087341_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.571 C2=0.000
Domain overlap (PFAM):
C1:
PF150281=PTCRA=FE(35.3=100),PF0009014=TSP_1=WD(100=91.1)
A:
PF150281=PTCRA=FE(12.8=100),PF128772=DUF3827=PU(16.4=52.4)
C2:
PF150281=PTCRA=PD(19.2=46.2),PF128772=DUF3827=PD(82.1=84.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGCAGTCAAAGAACTGCA
R:
TTTCCTGTAGACGAAGAGCGC
Band lengths:
146-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]