BtaEX0039146 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010241 | UNC5D
Description
Bos taurus unc-5 homolog D (C. elegans) (UNC5D), mRNA. [Source:RefSeq mRNA;Acc:NM_001192518]
Coordinates
chr27:31007384-31033067:+
Coord C1 exon
chr27:31007384-31007468
Coord A exon
chr27:31030753-31030921
Coord C2 exon
chr27:31032840-31033067
Length
169 bp
Sequences
Splice sites
3' ss Seq
ATTCTTTCCCAACCGTACAGCCT
3' ss Score
5.08
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GGGTGAGTTTACTGATACCACATGGAGCCATCCCAGAGGAGAATTCCTGGGAAATTTACATGTCCATCAACCAAGGTGAACCCAG
Seq A exon
CCTCCAGTCAGATGGATCCGAGGTGCTCCTGAGTCCGGAAGTCACCTGCGGTCCCCCTGACATGATTGTCACCACTCCCTTTGCCCTGACCATCCCACACTGTGCGGACGTCAGCTCTGAGCACTGGAACATCCATTTAAAGAAGAGGACCCAGCAGGGCAAGTGGGAG
Seq C2 exon
GAAGTGATGTCGGTGGAGGATGAATCCACATCCTGCTACTGCCTGTTGGACCCTTTTGCATGTCACGTGCTCCTAGACAGCTTTGGGACTTATGCCCTCACCGGGGAACCCATCACAGACTGTGCCGTGAAGCAGCTCAAGGTGGCAGTTTTTGGCTGCATGTCCTGTAACTCTCTGGACTACAACTTGAGGGTCTACTGTGTGGACAACACCCCTTGGGCATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010241-'16-29,'16-28,17-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.088 C2=0.013
Domain overlap (PFAM):
C1:
PF0079115=ZU5=FE(27.5=100)
A:
PF0079115=ZU5=PD(51.0=91.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCAACCAAGGTGAACCCA
R:
CTGAAATGCCCAAGGGGTGTT
Band lengths:
250-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development