RnoEX6055775 @ rn6
Exon Skipping
Gene
ENSRNOG00000011858 | Unc5d
Description
unc-5 netrin receptor D [Source:RGD Symbol;Acc:1309245]
Coordinates
chr16:67531247-67552225:+
Coord C1 exon
chr16:67531247-67531331
Coord A exon
chr16:67550283-67550451
Coord C2 exon
chr16:67551998-67552225
Length
169 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTCTCATCTGTGAAGTCT
3' ss Score
5.36
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GGGTGAGTCTACTCATACCACATGGTGCCATCCCAGAGGAGAATTCTTGGGAGATTTATATGTCAATCAACCAAGGTGAACCCAG
Seq A exon
TCTGCAGTCAGATGGATCTGAGGTCCTCCTGAGTCCTGAAGTCACCTGTGGGCCTCCAGATATGCTTGTCACAACTCCCTTTGCACTGACCATCCCTCACTGTGCAGACGTCAGTTCAGAGCATTGGAACATCCACTTGAAGAAGAGAACGCAGCAGGGAAAGTGGGAG
Seq C2 exon
GAAGTAATGTCAGTGGAGGATGAGTCCACATCCTGTTACTGCCTCTTGGATCCCTTCGCCTGTCATGTGCTGCTTGATAGCTTTGGAACGTATGCCCTCACGGGAGAGCCCATCACAGACTGTGCGGTAAAGCAGCTCAAGGTGGCTGTGTTTGGCTGCATGTCCTGTAACTCCTTGGATTACAACCTGAGAGTTTATTGTGTGGACAACACTCCTTGTGCATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011858-'19-17,'19-16,20-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.088 C2=0.013
Domain overlap (PFAM):
C1:
PF0079115=ZU5=FE(27.5=100)
A:
PF0079115=ZU5=PD(51.0=91.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATGGTGCCATCCCAGAG
R:
AGGAGTTACAGGACATGCAGC
Band lengths:
242-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]