DreEX0083414 @ danRer10
Exon Skipping
Gene
ENSDARG00000061541 | unc5db
Description
unc-5 homolog Db (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-060531-162]
Coordinates
chr5:26759072-26781430:+
Coord C1 exon
chr5:26759072-26759156
Coord A exon
chr5:26775557-26775728
Coord C2 exon
chr5:26781203-26781430
Length
172 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTGTTTTTTTTGTAGTGC
3' ss Score
7.87
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GAGTGAGCTTGCTGGTTCCTCACGGGGCGATTGCTGATGACACCTCTTGGGAAATGTACATGCTCATAAATCAAGGAGAGACTAG
Seq A exon
TGCCCAATCAGAGGAGAGGTGTGAGATTCTACTGGGGCCAGAGATCACATATGGACCTCCGGGCCTAAGCCTGTCCTGTCCTGTTGCCATGACGATAGCTCATTGTGCTGAAGTCAGCGCCGAAAACTGGAACATTAAACTCAAGAGACAAACCAAGGACAACAAGTGGGAG
Seq C2 exon
GAAATAATGTCAGTAGATGATGAATCAACCTCCTGCTATTGCCTGATGGACTCACATAGCTGTCACTTGTTGCTGGATCAGCCGGGCTGTTATGCGCTGGTGGGGGAGCCAATCACCGATGCCGCCATAAAGAGACTAAGGATTGCTGTGTTTGGCAGTATGGAGGCTTCCTCTTTGGACTACAGCCTGCGAGTGCACTGTGTAGACGATACGCCACATGCCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061541-'9-14,'9-13,10-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.013
Domain overlap (PFAM):
C1:
PF0079115=ZU5=FE(27.2=100)
A:
PF0079115=ZU5=PD(51.5=91.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGATGACACCTCTTGGGA
R:
CGCAGGCTGTAGTCCAAAGAG
Band lengths:
245-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]