GgaEX6024644 @ galGal3
Exon Skipping
Gene
ENSGALG00000001608 | UNC5D
Description
NA
Coordinates
chr22:1905621-1909654:+
Coord C1 exon
chr22:1905621-1905705
Coord A exon
chr22:1908252-1908420
Coord C2 exon
chr22:1909427-1909654
Length
169 bp
Sequences
Splice sites
3' ss Seq
ATGTTGTTCTTTACCCCCAGCCT
3' ss Score
8.28
5' ss Seq
GAGGTACGT
5' ss Score
10.2
Exon sequences
Seq C1 exon
GAGTCAGTCTGTTGGTGCCACATGGAGCAATTCCTGAAGAGAGTTCATGGGAAATCTATCTTGCCATCAACCCAAGAGAGTCCAG
Seq A exon
CCTGCAACCAGAAGGCCCAGATGTCCTCCTAGGACCAGAAGTGACGTGTGGCCCTTCGGATGTCTCTGTCAGCTCTCCATTTGCCTTGACTATACCACACTGTGCAGAAGTAAATTCAGAGCACTGGAATATCCACTTGAAGAAAAGGACACAGCAAGGGAAATGGGAG
Seq C2 exon
GAAGTGATGTCTGTGGAAGAGGAAACTACTTCCTGCTACTGCCTGCTGGATCCTTATGCCTGTCACATTCTCTTAAACAGCTTTGGAACTTATGCACTTATTGGAGAACCCATCTCTGAGTGTGCCGTCCGACAGCTGAAAGTAGCGGTTTTTGGCTGCCTATCTTGCAATTCTCTGGATTACAATCTGAGAGTGTATTGCATGGATAACACACCTTGTGCATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001608-'13-11,'13-10,14-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.053 C2=0.013
Domain overlap (PFAM):
C1:
PF0079115=ZU5=FE(27.5=100)
A:
PF0079115=ZU5=PD(51.0=91.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCAGTCTGTTGGTGCCAC
R:
TAGGCAGCCAAAAACCGCTAC
Band lengths:
247-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]