MmuEX6035218 @ mm10
Exon Skipping
Gene
ENSMUSG00000063626 | Unc5d
Description
unc-5 netrin receptor D [Source:MGI Symbol;Acc:MGI:2389364]
Coordinates
chr8:28694515-28715807:-
Coord C1 exon
chr8:28715723-28715807
Coord A exon
chr8:28696330-28696498
Coord C2 exon
chr8:28694515-28694742
Length
169 bp
Sequences
Splice sites
3' ss Seq
CTCTTTTCTCATCTCTGAAGCCT
3' ss Score
7.21
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GGGTGAGTCTACTCATACCACATGGTGCCATCCCAGAGGAGAATTCTTGGGAGATTTATATGTCAATCAACCAAGGTGAACCGAG
Seq A exon
CCTGCAGTCAGATGGATCTGAGGTTCTCCTGAGTCCTGAAGTCACCTGTGGGCCTCCAGATATGCTTGTCACAACTCCCTTTGCGCTGACCATCCCTCACTGTGCAGACGTCAGTTCAGAGCACTGGAACATTCACCTGAAGAAGAGGACCCAGCAGGGGAAGTGGGAG
Seq C2 exon
GAAGTGATGTCAGTGGAGGATGAGTCCACATCCTGTTACTGCCTCTTGGATCCCTTTGCCTGTCACGTGCTGCTTGATAGCTTTGGAACGTATGCCCTCACAGGAGAGCCAATCACAGACTGTGCCGTAAAGCAGCTCAAGGTGGCTGTGTTTGGCTGCATGTCCTGTAACTCCTTGGATTACAACCTGAGAGTTTACTGTGTGGACAATACTCCTTGTGCATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063626-'18-16,'18-15,19-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.088 C2=0.013
Domain overlap (PFAM):
C1:
PF0079115=ZU5=FE(27.5=100)
A:
PF0079115=ZU5=PD(51.0=91.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATGGTGCCATCCCAGAG
R:
AGGAGTTACAGGACATGCAGC
Band lengths:
242-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types