BtaEX0039581 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031575 | VAV3
Description
vav 3 guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:12659]
Coordinates
chr3:35702775-35721889:+
Coord C1 exon
chr3:35702775-35702875
Coord A exon
chr3:35715119-35715144
Coord C2 exon
chr3:35721844-35721889
Length
26 bp
Sequences
Splice sites
3' ss Seq
AATTTTTACATTTGTTTCAGAAC
3' ss Score
8.24
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GGGAACATTTTTTCAAGGTTATTTGTGTGTTAAGTGTGGTGCCAGAGCACACAAAGAATGTTTGGGAAGAGTAGACAATTGCAGCAGAGTTAATTCCGCTG
Seq A exon
AACAAGGGACGCTCAAACCATCTGAG
Seq C2 exon
AAACGGACCAATGGACTCCGAAGAACCCATAGACCGGTGGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031575_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=1.000 C2=0.938
Domain overlap (PFAM):
C1:
PF0063014=Filamin=FE(13.8=100),PF0013017=C1_1=PD(58.5=88.6),PF144461=Prok-RING_1=FE(61.8=100)
A:
PF0063014=Filamin=FE(3.3=100),PF144461=Prok-RING_1=PD(10.9=66.7)
C2:
PF0063014=Filamin=FE(6.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTAAGTGTGGTGCCAGAGC
R:
GGATCCACCGGTCTATGGGTT
Band lengths:
118-144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development