GgaEX1062993 @ galGal4
Exon Skipping
Gene
ENSGALG00000001915 | VAV3
Description
guanine nucleotide exchange factor VAV3 [Source:RefSeq peptide;Acc:NP_996745]
Coordinates
chr8:1009567-1044561:-
Coord C1 exon
chr8:1044464-1044561
Coord A exon
chr8:1036991-1037013
Coord C2 exon
chr8:1009567-1009632
Length
23 bp
Sequences
Splice sites
3' ss Seq
AACTTTTACTTACGTTTCAGAAC
3' ss Score
7.74
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GGGAACATTTTATCAAGGCTATTTATGCTCTAAGTGTGGAGCTGGAGCGCACAAAGAATGTTTAGGAAGATTAGACAATTGTGGCAGAGCTAATTCAG
Seq A exon
AACACGGAAACCTGAAACACGAG
Seq C2 exon
GGCAGAAATTTAACGACAGGAGAACTTGGCTTCTTCCCAAGTGATGCAGTGAAGCCCAGCCCTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001915_MULTIEX1-16/26=15-19
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0063014=Filamin=FE(9.7=100),PF0013017=C1_1=PD(58.5=88.6)
A:
PF0063014=Filamin=FE(2.0=100)
C2:
PF0063014=Filamin=FE(6.0=100),PF0765312=SH3_2=PD(30.2=86.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTAAGTGTGGAGCTGGAGC
R:
GCATCACTTGGGAAGAAGCCA
Band lengths:
118-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]