RnoEX0097891 @ rn6
Exon Skipping
Gene
ENSRNOG00000020485 | Vav3
Description
vav guanine nucleotide exchange factor 3 [Source:RGD Symbol;Acc:1565941]
Coordinates
chr2:212471918-212487554:+
Coord C1 exon
chr2:212471918-212472018
Coord A exon
chr2:212482975-212483000
Coord C2 exon
chr2:212487509-212487554
Length
26 bp
Sequences
Splice sites
3' ss Seq
AATTTTTACCTTTGTTTCAGAAC
3' ss Score
9.11
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GGGGACATTTTATCAAGGCTACTTATGTTTTAAGTGTGGAGCAAAAGCGCATAAAGAATGTTTGGGAAGAGTAGACAATTGTGGCAGAGTTAATTCCGTTG
Seq A exon
AACAAGGGCCATTCAAACCACCGGAG
Seq C2 exon
AAGCGGACCAATGGACTTCGGAGAGCTTCCAGACAGGTGGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020485_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=1.000 C2=0.750
Domain overlap (PFAM):
C1:
PF0063014=Filamin=FE(14.0=100),PF0013017=C1_1=PD(58.5=88.6)
A:
PF0063014=Filamin=FE(3.3=100)
C2:
PF0063014=Filamin=FE(6.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGTGTGGAGCAAAAGCGCA
R:
TCCACCTGTCTGGAAGCTCTC
Band lengths:
112-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]