GgaEX1062993 @ galGal3
Exon Skipping
Gene
ENSGALG00000001915 | Q8UUX6_CHICK
Description
NA
Coordinates
chr8:1039490-1050171:-
Coord C1 exon
chr8:1050071-1050171
Coord A exon
chr8:1042601-1042623
Coord C2 exon
chr8:1039490-1039535
Length
23 bp
Sequences
Splice sites
3' ss Seq
AACTTTTACTTACGTTTCAGAAC
3' ss Score
7.74
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GGGAACATTTTATCAAGGCTATTTATGCTCTAAGTGTGGAGCTGGAGCGCACAAAGAATGTTTAGGAAGATTAGACAATTGTGGCAGAGCTAATTCAGGTG
Seq A exon
AACACGGAAACCTGAAACACGAG
Seq C2 exon
AAACGAACAAATGGGATTAGAAGGAACTCCAGACACGTGGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001915-'23-27,'23-25,24-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=1.000 C2=0.938
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(58.5=88.6),PF144461=Prok-RING_1=FE(63.0=100),PF0063014=Filamin=FE(9.7=100)
A:
PF144461=Prok-RING_1=PD(11.1=75.0),PF0063014=Filamin=FE(2.0=100)
C2:
PF0063014=Filamin=FE(4.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTAAGTGTGGAGCTGGAGC
R:
TCCACGTGTCTGGAGTTCCTT
Band lengths:
115-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]