BtaEX0039612 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012963 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr22:11488560-11490118:+
Coord C1 exon
chr22:11488560-11488718
Coord A exon
chr22:11489255-11489434
Coord C2 exon
chr22:11489973-11490118
Length
180 bp
Sequences
Splice sites
3' ss Seq
GAGGCCCAGTCCTCTCATAGGGG
3' ss Score
1.41
5' ss Seq
AAGGTAGCC
5' ss Score
7.58
Exon sequences
Seq C1 exon
GGCCTCCAGGCCACGGCACATGAGATCAGCGCCCTGAGGGGCAATGCCGAGGAGCTGGACCTGTGGTACCGTGGAGCCCTGGTGCAGGAGCACGTGACCATGGGCAGCGAGCCCCCCCACTTCCTCGCCATCTTCCAGGGCCAGCTCGTGATCTTCCAG
Seq A exon
GGGCACCCCAGGCACAGCAGGAAGGGGCAGCCAGCACCCGCCGTGAGCCTCTTCCACATCCAAGGCACCGACAGCTACAACACCCGGACCATGGAGGTGCCAGCCCGCGCCTCAGCCCTCAACTCCAGCGACGTCTTCCTGCTGGTGACAGCCAACCTCTGCTACCTCTGGTTTGGAAAG
Seq C2 exon
GGCTGCAGCGGTGACCAGCGTGAGATGGCGCGGACGGTGGTCACCATCATCTGCAGGGAGGATATGGAGATAGTGCTGGAGGGTCAGGAGCCTCCCAACTTCTGGGAGGCTCTGGGGGGCCGGGCGCCCTACCGCAGCAACAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012963-'20-18,'20-17,22-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(49.4=77.4)
A:
PF0062617=Gelsolin=PU(47.8=55.0)
C2:
PF0062617=Gelsolin=PD(49.3=69.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATGAGATCAGCGCCCTG
R:
CAGAAGTTGGGAGGCTCCTGA
Band lengths:
247-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development