MmuEX6069666 @ mm10
Exon Skipping
Gene
ENSMUSG00000038775 | Vill
Description
villin-like [Source:MGI Symbol;Acc:MGI:1201781]
Coordinates
chr9:119065860-119068456:+
Coord C1 exon
chr9:119065860-119066018
Coord A exon
chr9:119066701-119066880
Coord C2 exon
chr9:119068312-119068456
Length
180 bp
Sequences
Splice sites
3' ss Seq
GAGGCTTTGCCTTCTTCTAGGGG
3' ss Score
8.12
5' ss Seq
AAGGTACCA
5' ss Score
7.87
Exon sequences
Seq C1 exon
GGCCACCAAAGCACTGTAGAAGACACCAAGGCCCTGAACTGCAGTGCTGAAGAGTTGGACCTCATGCACCAGGGTGCACTGGCGCAGGGGCATGTGACCATGGGCAGTGAGCCTCCCCACTTCCTAGCCATCTTCCAGGGGCGGCTGGTGGTCTTCCAG
Seq A exon
GGGAATGCAGGCAACAAAGGGGAAAGACCACCAGTATCCGACACCAGGCTTTTCCACGTGCAAGGGACCGAGAGCCACAACACCAGAACTATGGAGGTGCCGGCCCGTGCCTCCTCCCTCACTTCTGGTGACGTCTTCTTTCTGATCACAAGTCATGTTTGCTATCTCTGGTTTGGGAAG
Seq C2 exon
GCTTCCCGAGGAGGTGTGGAGCATCCAGCCCCGACTGTTCGAGTGCTCCAGTCACGCAGGCTGCCTGGTCCTCACGGAAGTGCTGTTCTTTGGCCAAGAGGACTTGGACAAGTATGACATCATGTTACTAGACACCTGTCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038775_MULTIEX1-5/6=4-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.004 A=0.329 C2=0.010
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(49.4=77.4)
A:
PF0062617=Gelsolin=PU(48.6=56.7)
C2:
PF0062617=Gelsolin=PU(32.9=51.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGACACCAAGGCCCTGAAC
R:
CCTCTTGGCCAAAGAACAGCA
Band lengths:
242-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types