GgaEX6018216 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr2:4514573-4515993:+
Coord C1 exon
chr2:4514573-4514731
Coord A exon
chr2:4515451-4515630
Coord C2 exon
chr2:4515848-4515993
Length
180 bp
Sequences
Splice sites
3' ss Seq
TTTCCTCTGTTTCCGTGCAGGGT
3' ss Score
11.75
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GGTCGCCACGCCTCTGTGGATGAAATCACTGCCTGTGCCCTCAATGCCATCGAGTTGGACAAAAAGCATGGGGATGAGGCTGTGCAGGTGCGCGTGACAATGGGGAAGGAGCCAACACACTTCCTGGCAATCTTCAAGGGCAAGCTGATCATTTACGAG
Seq A exon
GGTGGCACAAGCCGGGCCCAGAAAAGCACCCCCGAGCCAGCAATACGCCTCTTCCAGGTGAGAGGCACAAATGAGATGAACACCAAGGCCACGGAGGTGCCAGCCCGGGCCTCCTCTCTCAACTCCAATGATGTATTCCTGCTAGCAACCAACCAAGTCTGCTACCTGTGGTGTGGGAAG
Seq C2 exon
GGCTGCAGCGGAGATGAGAGGGAGATGGCAAAGATGGTGGCTGACATTGTCTCCAGGAGGGACAAGCACACCATTTTGGAGGGACAGGAGCCAGCAGAGTTCTGGGAAGCCCTGGGAGGCAAAGCCCCTTATGCCAGTGAAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005763-'12-12,'12-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=0.167 C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(49.4=77.4)
A:
PF0062617=Gelsolin=PU(48.6=56.7)
C2:
PF0062617=Gelsolin=PD(48.6=69.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACGCCTCTGTGGATGAAAT
R:
GCTCCTGTCCCTCCAAAATGG
Band lengths:
245-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]