RnoEX0097994 @ rn6
Exon Skipping
Gene
ENSRNOG00000011446 | Vill
Description
villin-like [Source:RGD Symbol;Acc:1304843]
Coordinates
chr8:127747598-127749343:+
Coord C1 exon
chr8:127747598-127747756
Coord A exon
chr8:127748491-127748670
Coord C2 exon
chr8:127749198-127749343
Length
180 bp
Sequences
Splice sites
3' ss Seq
GAGGCCACACCTTCTTCCAGGGG
3' ss Score
4.06
5' ss Seq
AAGGTACCA
5' ss Score
7.87
Exon sequences
Seq C1 exon
GGCCACCAAAGCACTGTAGAAGACGTCAAGGCCCTGAACTGCAACGCTGAGGAGTTGGACCTCTTACACCAGGGTGCTCTGGTGCAGGGGCATGTGACCATGGGCAGAGAGCCTCCCCACTTCCTTGCCATCTTCCAGGGGCAGCTGGTGGTCCTTCAG
Seq A exon
GGGAATGCAGGCAACAAAGGGGGGAGGCTGCCAATATCCGACACCAGGCTTTTCCACGTGCAAGGGACCGAGAGCCACAACACCAGGACTATGGAGGTGCCAGCCCGAGCCTCCTCCCTCACTTCCAGCGACGTCTTCTTTCTGATCACAAGTCACGTCTGTTACCTCTGGTTCGGGAAG
Seq C2 exon
GGTTGTCATGGGGACCAACGTGAGATGGCGCGGACAGTGGTAACTGTCTTTCCAGGGAATAATAAGGAAACAGTGCTGGAGGGTCAGGAGCCTCTCCACTTCTGGGAAGCCCTCGGAGGCCGGGCCCCCTATCCCAGTAACAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011446-'19-22,'19-19,20-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.150 C2=0.061
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(49.4=77.4)
A:
PF0062617=Gelsolin=PU(48.6=56.7)
C2:
PF0062617=Gelsolin=PD(48.6=69.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCACCAAAGCACTGTAGAA
R:
CTGACCCTCCAGCACTGTTTC
Band lengths:
246-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]