DreEX6094739 @ danRer10
Exon Skipping
Gene
ENSDARG00000001909 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr24:20281895-20285257:-
Coord C1 exon
chr24:20285099-20285257
Coord A exon
chr24:20284089-20284268
Coord C2 exon
chr24:20281895-20282040
Length
180 bp
Sequences
Splice sites
3' ss Seq
TTTTATTGATGTTTTATCAGGGT
3' ss Score
7.26
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
GGTCGTCACGCCACACAGGATGAGGTGACGGCATCCGCTTATCAGGCAGTCAATTTGGATAACAAATACAATGGAGCCCCAACACAGGTCCGAGTGGTCATGGGAAAAGAACCCAGACACTTCATGGCCATCTTTAAAGGCCGACTCATCATCTTCGAG
Seq A exon
GGTGGCACAGGCCGGTCGGGTGTTGTGAACCCTGATCCTGCTGCCAGACTCTTCCAGGTCAGAGGAACACATGAGCTGAACACAAAGGCCACAGAGGTTCCCGCCCGAGCCTCTTCTCTCAACACCAATGACGTCTTTCTGCTCAAAACATATCAGACTGTTTTCCTGTGGTACGGCAAG
Seq C2 exon
GGCTGCAGTGGAGATGAGCGAGAGATGGGAAAAGCTGTGGCTGATCTGCTCTCTGGTCAGGATAAGCAGACTGTGATGGAGGGTCAGGAACCAGCTGCTTTCTGGGTGCCTCTGGGAGGAAAAGCTCCATACGCCAGTGACAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001909-'15-20,'15-19,16-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.100 C2=0.122
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(49.4=77.4)
A:
PF0062617=Gelsolin=PU(47.8=55.0)
C2:
PF0062617=Gelsolin=PD(49.3=69.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACGCCACACAGGATGAG
R:
CCTGACCCTCCATCACAGTCT
Band lengths:
243-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]