MmuEX6069666 @ mm9
Exon Skipping
Gene
ENSMUSG00000038775 | Vill
Description
villin-like [Source:MGI Symbol;Acc:MGI:1201781]
Coordinates
chr9:118974978-118976674:+
Coord C1 exon
chr9:118974978-118975136
Coord A exon
chr9:118975819-118975998
Coord C2 exon
chr9:118976529-118976674
Length
180 bp
Sequences
Splice sites
3' ss Seq
GAGGCTTTGCCTTCTTCTAGGGG
3' ss Score
8.12
5' ss Seq
AAGGTACCA
5' ss Score
7.87
Exon sequences
Seq C1 exon
GGCCACCAAAGCACTGTAGAAGACACCAAGGCCCTGAACTGCAGTGCTGAAGAGTTGGACCTCATGCACCAGGGTGCACTGGCGCAGGGGCATGTGACCATGGGCAGTGAGCCTCCCCACTTCCTAGCCATCTTCCAGGGGCGGCTGGTGGTCTTCCAG
Seq A exon
GGGAATGCAGGCAACAAAGGGGAAAGACCACCAGTATCCGACACCAGGCTTTTCCACGTGCAAGGGACCGAGAGCCACAACACCAGAACTATGGAGGTGCCGGCCCGTGCCTCCTCCCTCACTTCTGGTGACGTCTTCTTTCTGATCACAAGTCATGTTTGCTATCTCTGGTTTGGGAAG
Seq C2 exon
GGCTGTCATGGGGACCAACGTGAGATGGCGCGGACGGTGGTCAGTGTCTTCCCAGGGAATAACAAGGAGACAGTGCTGGAGGGTCAGGAGCCTCTCTACTTCTGGGAAGCCCTCGGAGGCCGGGCCCCCTATCCCAGTAACAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038775-'20-24,'20-22,23-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=0.328 C2=0.015
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(49.4=77.4)
A:
PF0062617=Gelsolin=PD(22.2=20.0),PF0062617=Gelsolin=PU(48.6=56.7)
C2:
PF0062617=Gelsolin=PD(48.6=69.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTGGACCTCATGCACCAG
R:
TTGTTACTGGGATAGGGGGCC
Band lengths:
251-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: