BtaEX0041051 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021948 | ZMYM6
Description
zinc finger, MYM-type 6 [Source:HGNC Symbol;Acc:HGNC:13050]
Coordinates
chr3:111252768-111254310:+
Coord C1 exon
chr3:111252768-111252883
Coord A exon
chr3:111253716-111253988
Coord C2 exon
chr3:111254160-111254310
Length
273 bp
Sequences
Splice sites
3' ss Seq
CCTTATCTGTATTTATTCAGAAT
3' ss Score
7.2
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GTGTCCAGGTTTTGTGCCATAGTTGTAAAACTTCAGCAGTCCCTCAGTATCACCTGGCCATGTCCAATGGAACGATACACAGCTTCTGCAGCTCCAGCTGTGTGGTGGCTTTCCAG
Seq A exon
AATGTATTTAACAAGCCAAAAGGAGCAAACTCTTCGGCAGTGCCTGTATCTCAGACCCAAGTGATTGTAAGCCCACCCTCTGGGTCAGCAGTGTCAGCCGGAAGAGGTCACACCTCTGCCTTTTCCCCCCGCTCCGTCAGTGGCTCTGTTGCAGCCAGTCTCCAGCCTCCTGCTCAGTTCCAGCAAGTTGCTTTAACCCATAGGATTGTCAGACTCAGGTGTCAGCACTGTAACCATCTGTTTGCGACAAAACCAGAACTTCTTTTTTACAAG
Seq C2 exon
GGGAGAATGTTTCTGTTTTGTGGCAAGCTTTGCTCTGATGAATACAAAAAGAAAAATAGAGTTATGGCAATGTGTGACTACTGTAAACTACAGAAAATTATAAAGGAGACTGTACGATTCTCAGGAGTTGATAAGCCATTCTGTAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021948_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.022 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(92.5=94.9)
A:
PF064679=zf-FCS=PU(57.9=24.2)
C2:
PF064679=zf-FCS=PD(36.8=27.5),PF064679=zf-FCS=PU(91.9=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCCAGGTTTTGTGCCATAG
R:
ACAGAATGGCTTATCAACTCCTGA
Band lengths:
260-533
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development