RnoEX6023387 @ rn6
Exon Skipping
Gene
ENSRNOG00000013865 | Zmym6
Description
zinc finger MYM-type containing 6 [Source:RGD Symbol;Acc:1561833]
Coordinates
chr5:145162111-145164657:+
Coord C1 exon
chr5:145162111-145162226
Coord A exon
chr5:145163622-145163897
Coord C2 exon
chr5:145164507-145164657
Length
276 bp
Sequences
Splice sites
3' ss Seq
TTTGCTTTGTATTCATTTAGAAT
3' ss Score
7.59
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GTATACAGGTTTTGTGTCATAGTTGTAAAACTGCAGCAGTCCCTCAGTACCACCTAGCAATGTCAAATGGAACGATTTGCAGCTTCTGTAGCTCCAACTGTGTGCTGGCTTTCCAG
Seq A exon
AATGTATTTAACAAGCCAAAGGGAAGGAACTCTTCATTGGCACCCATATCTCAAGGCCAAGAAGTGCTGAGCGCACCCATGCAGTCTGCAGTGTCAGCACGAAAAGAAGCCCCCGCCCCTTCCTTCAGCAGCCCCATCAGCAACCCTGCTGCAGCCGCTCTGGAGACCCTTGCCAAGGAGTCCCACCAGATCGCTTTGACCCTTTCCTTCTTGAAACTCACGTGCCTGCAGTGCAGCCTTCTGTTTGCCACAAAGCCAGAGCTGCTTTTCTACAAG
Seq C2 exon
GGTAGAATGTTTATGTTTTGTGGCAAGGCTTGCTGTGATGAATACAAAAGGCAAAATAAAGTTAAGGCCTTGTGCGACTACTGTAAGCTACAGAAGACCATAGAGGATACTGTGCGATTCTCAGGGGTTGACAAGCCTTTCTGTAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013865-'16-16,'16-15,19-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF064679=zf-FCS=PU(59.0=25.0)
C2:
PF064679=zf-FCS=PD(35.9=27.5),PF064679=zf-FCS=PU(91.9=66.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATACAGGTTTTGTGTCATAGTTGT
R:
ACAGAAAGGCTTGTCAACCCC
Band lengths:
260-536
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]