HsaEX0072929 @ hg38
Exon Skipping
Gene
ENSG00000163867 | ZMYM6
Description
zinc finger MYM-type containing 6 [Source:HGNC Symbol;Acc:HGNC:13050]
Coordinates
chr1:35010447-35012005:-
Coord C1 exon
chr1:35011890-35012005
Coord A exon
chr1:35010758-35011036
Coord C2 exon
chr1:35010447-35010597
Length
279 bp
Sequences
Splice sites
3' ss Seq
CCTTATTTGTTTTCATTCAGAAT
3' ss Score
8.8
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GTGTCCAGGTTTCATGTCATAGTTGTAAAACCTCAGCAATCCCTCAGTATCACCTAGCCATGTCAAATGGAACTATATACAGCTTCTGCAGCTCCAGTTGTGTGGTTGCTTTCCAG
Seq A exon
AATGTATTTAGCAAGCCAAAAGGAACAAACTCTTCGGCGGTGCCCCTGTCTCAGGGCCAAGTGGTTGTAAGCCCGCCCTCCTCCAGGTCAGCAGTGTCAATAGGAGGAGGTAACACCTCTGCCGTTTCCCCCAGCTCCATCCGTGGCTCTGCTGCAGCCAGCCTCCAACCTCTTGCTGAACAATCCCAGCAAGTTGCTTTAACCCATACAGTTGTTAAACTCAAGTGTCAGCACTGTAACCATCTATTTGCCACAAAACCAGAACTTCTTTTTTACAAG
Seq C2 exon
GGTAAAATGTTTCTGTTTTGTGGCAAGAATTGCTCTGATGAATACAAGAAGAAAAATAAAGTTGTGGCAATGTGTGACTACTGTAAACTGCAGAAAATTATAAAGGAGACTGTGCGATTCTCAGGGGTTGATAAGCCATTCTGTAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163867_MULTIEX3-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF064679=zf-FCS=PU(60.0=25.8)
C2:
PF064679=zf-FCS=PD(35.0=27.5),PF064679=zf-FCS=PU(91.9=66.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCCAGGTTTCATGTCATAGT
R:
ACAGAATGGCTTATCAACCCCTG
Band lengths:
260-539
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development