Special

HsaEX0072929 @ hg19

Exon Skipping

Gene
ENSG00000163867 | ZMYM6
Description
zinc finger, MYM-type 6 [Source:HGNC Symbol;Acc:13050]
Coordinates
chr1:35476048-35477606:-
Coord C1 exon
chr1:35477491-35477606
Coord A exon
chr1:35476359-35476637
Coord C2 exon
chr1:35476048-35476198
Length
279 bp
Sequences
Splice sites
3' ss Seq
CCTTATTTGTTTTCATTCAGAAT
3' ss Score
8.8
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GTGTCCAGGTTTCATGTCATAGTTGTAAAACCTCAGCAATCCCTCAGTATCACCTAGCCATGTCAAATGGAACTATATACAGCTTCTGCAGCTCCAGTTGTGTGGTTGCTTTCCAG
Seq A exon
AATGTATTTAGCAAGCCAAAAGGAACAAACTCTTCGGCGGTGCCCCTGTCTCAGGGCCAAGTGGTTGTAAGCCCGCCCTCCTCCAGGTCAGCAGTGTCAATAGGAGGAGGTAACACCTCTGCCGTTTCCCCCAGCTCCATCCGTGGCTCTGCTGCAGCCAGCCTCCAACCTCTTGCTGAACAATCCCAGCAAGTTGCTTTAACCCATACAGTTGTTAAACTCAAGTGTCAGCACTGTAACCATCTATTTGCCACAAAACCAGAACTTCTTTTTTACAAG
Seq C2 exon
GGTAAAATGTTTCTGTTTTGTGGCAAGAATTGCTCTGATGAATACAAGAAGAAAAATAAAGTTGTGGCAATGTGTGACTACTGTAAACTGCAGAAAATTATAAAGGAGACTGTGCGATTCTCAGGGGTTGATAAGCCATTCTGTAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163867-'19-19,'19-18,20-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF064679=zf-FCS=PD(92.5=94.9)

							
A:
PF064679=zf-FCS=PU(60.0=25.8)

							
C2:
PF064679=zf-FCS=PD(35.0=27.5),PF064679=zf-FCS=PU(91.9=66.7)

						

					

				








    
Main Inclusion Isoform:
ENSP00000349708f7532A





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSP00000349708, ENSP00000349708f7533A, ENSP00000362437, ENSP00000421752
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


hg38




Conservation


Mouse
(mm10)
chr4:127103412-127103474 
HIGH PSI
MmuEX0053950
(Zmym6)
Mouse
(mm9)
chr4:126780656-126780931 
HIGH PSI
MmuEX0053950
(Zmym6)
Rat
(rn6)
chr5:145163622-145163897 
HIGH PSI
RnoEX6023387
(Zmym6)
Cow
(bosTau6)
chr3:111253716-111253988 
HIGH PSI
BtaEX0041051
(ZMYM6)
Chicken
(galGal4)
chr23:4313810-4314082 
HIGH PSI
GgaEX1000552
([1])
Chicken
(galGal3)
chr23:4683410-4683682 
HIGH PSI
GgaEX1000552
([2])
Zebrafish
(danRer10)
chr19:40498612-40498815 
HIGH PSI
DreEX6073951
(zmym4)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GTGTCCAGGTTTCATGTCATAGT

				
R: 
ACAGAATGGCTTATCAACCCCTG

				
Band lengths: 
260-539

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Autistic and control brains
  • Pre-implantation embryo development






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