BtaEX0041510 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002668 | ZNF711
Description
zinc finger protein 711 [Source:HGNC Symbol;Acc:HGNC:13128]
Coordinates
chrX:74977153-74986702:-
Coord C1 exon
chrX:74986547-74986702
Coord A exon
chrX:74985543-74985680
Coord C2 exon
chrX:74977153-74977200
Length
138 bp
Sequences
Splice sites
3' ss Seq
TACATGTTTTAACTTTTAAGGTG
3' ss Score
8.27
5' ss Seq
TCAGTAAGA
5' ss Score
5.52
Exon sequences
Seq C1 exon
TAGATGATGTTGGGGAAAAATTAGAGCATATGGGGAACACACCATTAAAAATCAGCAGTGATGGTTCACAAGAAGATGTTAAAGAAGATGGATTTGGTTCAGAAGTAATAAAAGTGTATATATTTAAGGCCGAGGCTGAAGATGATGTTGAAATAG
Seq A exon
GTGGAACAGAAATTGTCACAGAGAGTGAGTACACCAATGGACATTCTGTAGCTGGAGTGCTTGACCAGAGCCGAATGCAGCGGGAGAAGATGGTTTACATGGCAGTTAAAGATTCTTCTCAAGAAGAAGATGATATCA
Seq C2 exon
GAGATGAAAGAAGAGTTTCTCGAAGGTATGAAGATTGTCAGTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002668_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.434 A=0.851 C2=0.765
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(17.0=100)
A:
PF047048=Zfx_Zfy_act=FE(15.1=100)
C2:
PF047048=Zfx_Zfy_act=FE(5.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGATGTTGGGGAAAAATTAGAGCA
R:
CTGATGACTGACAATCTTCATACCT
Band lengths:
202-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development