GgaEX0028621 @ galGal4
Exon Skipping
Gene
ENSGALG00000006929 | ZNF6
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NHJ7]
Coordinates
chr4:8663967-8666278:-
Coord C1 exon
chr4:8666120-8666278
Coord A exon
chr4:8664692-8664838
Coord C2 exon
chr4:8663967-8664104
Length
147 bp
Sequences
Splice sites
3' ss Seq
GTTTGACTTCTTTTTTTAAGGTG
3' ss Score
8.76
5' ss Seq
TTAGTAAGC
5' ss Score
4.41
Exon sequences
Seq C1 exon
TGGATGATGTTGGAGAAAAACTGGACCACATAGGAAGCACTCCCTTGAAAATCAGTACTGAGGTGACAAATGATGAAGTGGCTAAAGATGATGGGTTTGGTTCCGAAGTTATCAAAGTATACATATTTAAAGCTGAAGCTGAAGATGATGTTGAAATAG
Seq A exon
GTGGGACAGAAATTGTCACAGAGAGTGATTTTCACAATGGACATTCAGTAGCTGGAGTAATTGAACAAGGAGGTGTTGGTAGAATGCAGCGAGAAAAAATGGTTTACATGGCTGTTAAGGACTCTTCTCAGGAAGATGAAGATATTA
Seq C2 exon
GCTGTGCTGAAATAGCAGATGAAGTTTACATGGAAGTTATTGTAGGTGAAGAAGAAGCTACATCACTTCCAGACACACAGCTCGAAGAGACTGGTGTGAATAAAACTTTTGTTCCTGTTGCTTGGGCTGCTGCTTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006929_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.219 A=0.340 C2=0.213
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(15.8=100)
A:
PF047048=Zfx_Zfy_act=FE(14.6=100)
C2:
PF047048=Zfx_Zfy_act=FE(13.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGGAGAAAAACTGGACCACA
R:
ACCAGTCTCTTCGAGCTGTGT
Band lengths:
247-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]