HsaEX6052475 @ hg38
Exon Skipping
Gene
ENSG00000147180 | ZNF711
Description
zinc finger protein 711 [Source:HGNC Symbol;Acc:HGNC:13128]
Coordinates
chrX:85264275-85268341:+
Coord C1 exon
chrX:85264275-85264430
Coord A exon
chrX:85265118-85265255
Coord C2 exon
chrX:85268294-85268341
Length
138 bp
Sequences
Splice sites
3' ss Seq
TGCGTGTTTTAATTTTTAAGGTG
3' ss Score
9.82
5' ss Seq
TCAGTAAGA
5' ss Score
5.52
Exon sequences
Seq C1 exon
TGGATGATGTTGGAGAAAAATTAGAGCATATGGGGAATACACCATTAAAAATTGGCAGTGATGGTTCACAAGAAGATGCTAAAGAAGATGGGTTTGGTTCTGAAGTTATAAAAGTGTATATATTTAAAGCGGAGGCTGAAGATGATGTTGAAATAG
Seq A exon
GTGGAACAGAAATTGTCACAGAGAGTGAGTACACCAGTGGACATTCAGTAGCTGGAGTGCTTGACCAGAGCCGAATGCAGCGGGAGAAGATGGTTTACATGGCAGTTAAAGATTCTTCTCAAGAAGAAGATGATATCA
Seq C2 exon
GAGATGAAAGAAGAGTTTCCCGAAGGTATGAAGATTGTCAAGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147180-'12-20,'12-15,13-20
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.434 A=0.706 C2=0.588
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(17.0=100)
A:
PF047048=Zfx_Zfy_act=FE(15.1=100)
C2:
PF047048=Zfx_Zfy_act=FE(5.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGATGTTGGAGAAAAATTAGAGC
R:
TGATGCTTGACAATCTTCATACCT
Band lengths:
202-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains