DreEX6057315 @ danRer10
Exon Skipping
Gene
ENSDARG00000071868 | znf711
Description
zinc finger protein 711 [Source:ZFIN;Acc:ZDB-GENE-081107-49]
Coordinates
chr14:11676675-11697008:-
Coord C1 exon
chr14:11696850-11697008
Coord A exon
chr14:11677110-11677244
Coord C2 exon
chr14:11676675-11676812
Length
135 bp
Sequences
Splice sites
3' ss Seq
TGTGTTCTGTTGTGTTGTAGGCA
3' ss Score
11.3
5' ss Seq
TAAGTGCGT
5' ss Score
2.73
Exon sequences
Seq C1 exon
TGGATGAAGTAGGGGGAAAGCTTGACATTGAAGACACCTCTTTAAAGATCAGTGCAGATGTCGGCCAAGATGATGACGGCTCAAAGGAGGATGAGTTCAGCTCGGAGGTCATAAAAGTTTACATCTTTAAAGCAGATGGAGATGAAGATGTGGAAATAG
Seq A exon
GCAGCACGGAGGTGGTAGAAGAGAGTGATTTTCCTGGTAGGCACACTGTGATGGAGTCAGTGGGTTCAGGAAGGCTGCCCAGAGAGAAGATGGTCTACATGGCTGTAAAGGATGCCAACCAAGAAGATGATTTAA
Seq C2 exon
ACTGTTCGGAGATGACTGACCAGGTGTATATGGAGGTCATTGTTGGGGAAGAAGAGGCTCCTGCTATCACAGAAGCTCAGATGGAGGACTCACCAGTTAACAAGACCATTGTTCCTGCAGCCTGGGCAACTGCTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071868-'5-9,'5-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.389 A=0.652 C2=0.362
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(17.3=100)
A:
PF047048=Zfx_Zfy_act=FE(14.7=100)
C2:
PF047048=Zfx_Zfy_act=FE(15.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGATGTCGGCCAAGATGAT
R:
CATAAGCAGTTGCCCAGGCTG
Band lengths:
244-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]