MmuEX6045745 @ mm10
Exon Skipping
Gene
ENSMUSG00000025529 | Zfp711
Description
zinc finger protein 711 [Source:MGI Symbol;Acc:MGI:3045342]
Coordinates
chrX:112623952-112627304:+
Coord C1 exon
chrX:112623952-112624107
Coord A exon
chrX:112624739-112624876
Coord C2 exon
chrX:112627170-112627304
Length
138 bp
Sequences
Splice sites
3' ss Seq
ATGTGTTTTTAAATTTTAAGGTG
3' ss Score
8.82
5' ss Seq
TCAGTAAGA
5' ss Score
5.52
Exon sequences
Seq C1 exon
TGGATGATGTGGGAGAGAAGTTAGAGCATATGGGGAACACGCCATTGAAAATCGCTAGCGATGGTTCACAAGAAGATGTTAAAGAAGATGCATTTGGTTCAGAAGTGATAAAAGTATATATCTTTAAAGCAGAGGCTGAAGATGATGTTGAAATAG
Seq A exon
GTGGGACAGAAATTGTCACAGAGAGTGAATACAGCAGTGGCCATTCTGTAGCTGGAGTGCTTGACCAGAGCCGAATGCAGCGAGAGAAAATGGTTTACATGGCAGTGAAAGATTCTTCCCAGGAACAGGATGATATCA
Seq C2 exon
GTAATGCTGATATATCAAATGAACTGTGCATGGAAGTCATTATAGGGGAAGAGGAAGGAACTCCCCTTGAAATTCCGCTTCAGGACTGTGATGTTAATAAAACAGGTTCCCCTGTTCTCTCTCCTGCATCATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025529-'8-17,'8-13,9-17=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.416 A=0.754 C2=0.383
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(17.1=100)
A:
PF047048=Zfx_Zfy_act=FE(15.1=100)
C2:
PF047048=Zfx_Zfy_act=FE(12.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGAACACGCCATTGAAAA
R:
GCAGGAGAGAGAACAGGGGAA
Band lengths:
253-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types