RnoEX6026292 @ rn6
Exon Skipping
Gene
ENSRNOG00000022391 | Zfp711
Description
zinc finger protein 711 [Source:RGD Symbol;Acc:1562768]
Coordinates
chrX:84086722-84089486:+
Coord C1 exon
chrX:84086722-84086877
Coord A exon
chrX:84087540-84087677
Coord C2 exon
chrX:84089352-84089486
Length
138 bp
Sequences
Splice sites
3' ss Seq
TACGTGTTTTAATTTTTAAGGTG
3' ss Score
9.27
5' ss Seq
TCAGTAAGA
5' ss Score
5.52
Exon sequences
Seq C1 exon
TGGATGATGTGGGAGAGAAGTTAGAGCATATGGGGAACACACCATTAAAAATTGGTAGTGATGGTTCACAAGAAGATGTTAAAGAAGATGGATTTGGTTCAGAAGTGATTAAAGTATATATATTTAAAGCAGAGGCTGAAGATGATGTTGAAATAG
Seq A exon
GTGGGACAGAAATTGTCACTGAGAGTGAATACACCAGTGGACATTCTGTAGCTGGAGTGCTTGACCAGAGCCGAATGCAGCGAGAGAAAATGGTTTACATGGCAGTGAAAGATTCTTCCCAAGAAGAAGATGATATCA
Seq C2 exon
GTTATGCTGAAATATCAGATGAACTGTACATGGAAGTCATTATAGGGGAAGAGGAAGGAAATCTCCTTGAGATTCAGCTTGAGGACTCTGATGTTAATAAAACAGTTTCCCCTGTTGTCTATCCTGCATCATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022391-'9-8,'9-7,10-8=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.434 A=0.596 C2=0.130
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(14.9=100)
A:
PF047048=Zfx_Zfy_act=FE(13.2=100)
C2:
PF047048=Zfx_Zfy_act=FE(12.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATATGGGGAACACACCATT
R:
GCAGGATAGACAACAGGGGAA
Band lengths:
258-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]