BtaEX6000194 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017839 | TIAM1
Description
T-cell lymphoma invasion and metastasis 1 [Source:HGNC Symbol;Acc:HGNC:11805]
Coordinates
chr1:3688089-3693318:+
Coord C1 exon
chr1:3688089-3688197
Coord A exon
chr1:3692924-3693103
Coord C2 exon
chr1:3693200-3693318
Length
180 bp
Sequences
Splice sites
3' ss Seq
CTGTATTTAAACTCTTCCAGCCA
3' ss Score
6.06
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
AAAGTGCTGTTCTCTCTGGGGGGATCCTTTCTGTATTACGCTGACCGCTTCAAGCTCTACAGTGCCTTCTGCGCCAGCCACACGAAGGTCCCCAAGGTCCTGGTGAAAG
Seq A exon
CCAAGACGGACGCAGCTTTCAAGGCGTTCCTGGACGCCCAGAACCCAAAGCAGCAGCATTCGTCCACCCTGGAGTCCTACCTCATCAAGCCCATCCAGAGGATCCTTAAGTATCCGCTTCTGCTGAAGGAGCTTTTTGCTCTGACGGACGCGGAGAGTGAGGAACACTACCACCTGGATG
Seq C2 exon
TGGCCATCAAGACTATGAACAAGGTTGCAAGTCATATCAATGAAATGCAGAAAATCCATGAGGAATTTGGGGCTGTGTTTGACCAGCTGATCGCTGAACAGACCGGTGAGAAAAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017839-'51-30,'51-29,52-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(18.9=100)
A:
PF0062115=RhoGEF=FE(31.6=100)
C2:
PF0062115=RhoGEF=PD(7.4=35.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGCTGTTCTCTCTGGGGG
R:
TTTCTCACCGGTCTGTTCAGC
Band lengths:
221-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]