MmuEX6063291 @ mm10
Exon Skipping
Gene
ENSMUSG00000002489 | Tiam1
Description
T cell lymphoma invasion and metastasis 1 [Source:MGI Symbol;Acc:MGI:103306]
Coordinates
chr16:89804693-89809476:-
Coord C1 exon
chr16:89809368-89809476
Coord A exon
chr16:89805083-89805262
Coord C2 exon
chr16:89804693-89804811
Length
180 bp
Sequences
Splice sites
3' ss Seq
CTGTGTTCTGTCCCTTCCAGCCA
3' ss Score
10.55
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
Exon sequences
Seq C1 exon
AAAGTGCTCTTCTCTCTGGGGGGATCCTTCCTGTACTACGCGGACCGCTTCAAGCTCTACAGTGCCTTCTGTGCGAGCCACACAAAAGTCCCCAAGGTCCTGGTGAAAG
Seq A exon
CCAAGACGGACACAGCCTTCAAGGCGTTCCTCGATGCCCAGAACCCGAGGCAGCAGCACTCATCCACGCTGGAGTCTTACCTCATCAAGCCCATCCAGAGGGTCCTCAAGTACCCGCTTCTGCTCAGGGAGCTGTTTGCGCTGACCGATGCGGAGAGCGAGGAACACTACCACCTGGACG
Seq C2 exon
TGGCCATCAAGACTATGAACAAGGTCGCCAGTCACATCAATGAGATGCAGAAGATCCACGAAGAGTTTGGTGCTGTGTTTGACCAGCTGATTGCTGAGCAGACGGGAGAGAAGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002489-'71-38,'71-37,72-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(18.9=100)
A:
PF0062115=RhoGEF=FE(31.6=100)
C2:
PF0062115=RhoGEF=PD(7.4=35.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGCTCTTCTCTCTGGGGG
R:
TCTTTCTTCTCTCCCGTCTGCT
Band lengths:
226-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types