RnoEX6056488 @ rn6
Exon Skipping
Gene
ENSRNOG00000021569 | Tiam1
Description
T-cell lymphoma invasion and metastasis 1 [Source:RGD Symbol;Acc:1307455]
Coordinates
chr11:29949996-29954729:-
Coord C1 exon
chr11:29954621-29954729
Coord A exon
chr11:29950365-29950544
Coord C2 exon
chr11:29949996-29950114
Length
180 bp
Sequences
Splice sites
3' ss Seq
CCTGTGTTCTTCCCTTCCAGCCA
3' ss Score
11.11
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
AAAGTGCTGTTCTCTCTGGGGGGATCCTTCCTGTACTACGCGGACCGCTTCAAGCTCTACAGTGCCTTCTGTGCGAGCCATACGAAAGTCCCCAAGGTCCTGGTGAAAG
Seq A exon
CCAAGACGGACACAGCCTTCAAGGCATTCCTAGATGCCCAGAACCCGAGGCAGCAGCACTCGTCCACACTAGAGTCTTACCTCATCAAGCCCATCCAGAGGGTCCTCAAGTACCCGCTTCTGCTCAGGGAGCTGTTTGCGCTGACCGACGCGGAGAGTGAGGAGCATTACCACCTGGATG
Seq C2 exon
TGGCCATCAAGACTATGAACAAGGTTGCCAGTCACATCAATGAGATGCAGAAGATCCACGAAGAATTTGGTGCTGTGTTCGACCAGCTGATTGCTGAGCAGACAGGAGAGAAGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021569-'40-35,'40-34,42-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(18.9=100)
A:
PF0062115=RhoGEF=FE(31.6=100)
C2:
PF0062115=RhoGEF=PD(7.4=35.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGCTGTTCTCTCTGGGGG
R:
TCTTTCTTCTCTCCTGTCTGCTCA
Band lengths:
226-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]