GgaEX6004200 @ galGal4
Exon Skipping
Gene
ENSGALG00000015842 | TIAM1
Description
T-cell lymphoma invasion and metastasis 1 [Source:HGNC Symbol;Acc:HGNC:11805]
Coordinates
chr1:103799589-103802262:-
Coord C1 exon
chr1:103802154-103802262
Coord A exon
chr1:103799829-103800008
Coord C2 exon
chr1:103799589-103799707
Length
180 bp
Sequences
Splice sites
3' ss Seq
GCTTCATTTTAATCTTTTAGCCA
3' ss Score
6.35
5' ss Seq
ATGGTACGG
5' ss Score
8.21
Exon sequences
Seq C1 exon
AAAGTGCTGTTTTCCTTGGGTGGATCCTTCCTTTACTACGCCGACCGTTTCAAGCTGTACAGTGCCTTCTGTGCCAGCCACACGAAAGTCCCAAAAGTACTGGTGAAAG
Seq A exon
CCAAGACAGACACTGCTTTCAAGGCATTTCTGGATGCTCAGAATCCCAGGCGGCAGCACTCCTCCACTCTGGAGTCTTACCTCATCAAACCCATCCAGAGGATACTGAAATACCCCCTCCTGCTGAAGGAGCTCTTTGCTCTGACTGATGTAGACAGTGAAGAACATTATCACCTTGATG
Seq C2 exon
TGGCCATAAAAACAATGAACAAAGTTGCCAGCCATATTAACGAAATGCAAAAAATCCATGAAGAATATGGGGCAGTGTTTGACCAACTCATAGCAGAACAAACAGGAGAGAAAAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015842-'53-44,'53-43,54-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(18.9=100)
A:
PF0062115=RhoGEF=FE(31.6=100)
C2:
PF0062115=RhoGEF=PD(7.4=35.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGTTTTCCTTGGGTGGA
R:
TTCTCTCCTGTTTGTTCTGCT
Band lengths:
218-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]